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Database NCBInr.2009.03.24 NCBInr.2009.03.24.random.concat NCBInr.2009.07.10 NCBInr.refseq.2009.09.14 NCBInr.refseq.2009.09.14.random SwissProt.2009.03.24 SwissProt.2009.03.24.random.concat SwissProt.2009.07.07 UniProtKB.2009.03.24 UniProtKB.2009.03.24.random.concat UniProtKB.2009.07.07 Reading Frame (DNA Only) 1 2 3 4 5 6 Taxonomy All HUMAN MOUSE HUMAN RODENT RODENT ROACH LOCUST BEETLE MICROORGANISMS ARABIDOPSIS THALIANA ARCHAEOGLOBUS FULGIDUS BACILLUS SUBTILIS BACULOVIRIDAE BORRELIA BURGDORFERI BOS TAURUS BOTHROPS INSULARIS BRASSICA BRUGIA MALAYI CAENORHABDITIS ELEGANS CANDIDA CANIS FAMILIARIS CAPRA HIRCUS CERCOPITHECUS AETHIOPS CHLAMYDIA TRACHOMATIS CHLAMYDOPHILA PNEUMONIAE DANIO RERIO DICTYOSTELIUM DISCOIDEUM DROSOPHILA MELANOGASTER EQUUS CABALLUS ESCHERICHIA COLI FELIS CATUS FRANCISELLA TULARENSIS GALLUS GALLUS GLYCINE MAX GREEN PLANTS GORILLA GORILLA HAEMOPHILUS HAEMOPHILUS INFLUENZAE HELICOBACTER PYLORI HOMO SAPIENS MACACA MAMMALS METHANOCOCCUS JANNASCHII HUMAN ADENOVIRUS 5 MUS MUSCULUS MYCOBACTERIUM MYCOPLASMA NEISSERIA ORYCTOLAGUS CUNICULUS ORYZA SATIVA OVIS ARIES PAN TROGLODYTES PSEUDOMONAS AERUGINOSA RATTUS NORVEGICUS SACCHAROMYCES SACCHAROMYCES CEREVISIAE SALMONELLA SCHIZOSACCHAROMYCES POMBE SHEWANELLA ONEIDENSIS SUS SCROFA SYNECHOCYSTIS TOXOPLASMA GONDII TREPONEMA PALLIDUM TRYPANOSOMA UNKNOWN UNREADABLE XENOPUS LAEVIS Output HTML XML Hits to file Name	Digest No enzyme Trypsin TrypsinPro SlymotrypsinFYWKR Chymotrypsin Chymotrypsin FYW ChymotrypsinFWYMEDLN V8 DE V8 E Lys-C Lys-N Arg-C Asp-N Asp-C DE-N CNBr Pepsin(porcine gastric) Glu-C Tyr-C Thermolysin Full Protein Pro-C CNBr/Trypsin CNBr/V8 DE CNBr/V8 E CNBr/Lys-C CNBr/Asp-N CNBr/Asp-C CNBr/Arg-C CNBr/V8 E CNBr/Trypsin/V8 DE CNBr/Trypsin/V8 E CNBr/Arg-C/V8 E CNBr/Lys-C/V8 E Trypsin/Asp-N Trypsin/DE-N Trypsin/V8 DE Trypsin/V8 E Trypsin/Glu-C Chymotrypsin/Arg-C Lys-C/Trypsin Lys-C/V8 DE Lys-C/V8 E Lys-C/Asp-N V8 DE/Chymotrypsin Arg-C/V8 E Max. Missed Cleavages Constant Mods Acetohydrazide (C-term) Acetohydrazide (DE) Acetyl (K) Acetyl (N-term) Acetyl:2H(3) (K) Acetyl:2H(3) (N-term) Amidated (C-term) Amidated+iTRAQ8plex (C-term) Amino (Y) Asn->Succinimide (N) Biotin (N-term) Carbamidomethyl (C) Carbamidomethyl (N-term) Carbamyl (K) Carbamyl (N-term) Carboxy (W) Carboxymethyl (C) Cys->Dha (C) Deamidated (N) Deamidated (Q) Dehydrated (D) Dehydrated (ST) Dehydro (C) Delta:2H(6)C(3) (K) Delta:2H(6)C(3) (N-term) Delta:H(2)C(3) (K) Delta:H(4)C(3)O(1) (C) Delta:H(4)C(3)O(1) (CHK) Delta:H(4)C(6) (K) Delta:H(6)C(3) (K) Delta:H(6)C(3) (N-term) Delta:H(6)C(6)O(1) (K) Delta:H(8)C(6)O(2) (K) Dethiomethyl (M) Dimethyl (N-term) Dioxidation (M) Dioxidation (W) DTT_C (C) DTT_C:2H(6) (C) DTT_ST (ST) DTT_ST:2H(6) (ST) Formyl (K) Formyl (N-term) GirardT (N) GlyGly (C) GlyGly (N-term) GlyTyr (N-term) Guanidinyl (K) HexNAc (ST) HexNAcHex (ST) HexNAcHexSA (ST) Hydroxymethyl (CRWHKNQY) ICAT-C (C) ICAT-C:13C(9) (C) ICAT-D (C) ICAT-D:2H(8) (C) IDEnT (C) iTRAQ4plex (K) iTRAQ4plex (N-term) iTRAQ4plex (Y) iTRAQ8plex (K) iTRAQ8plex (N-term) Label:13C(6) (K) Label:13C(6) (L) Label:13C(6) (R) Label:13C(6)15N(1) (L) Label:13C(6)15N(2) (K) Label:13C(6)15N(2)+Carbamyl (K) Label:13C(6)15N(4) (R) Label:18O(1) (C-term) Label:18O(2) (C-term) Label:2H(3) (L) Methyl (C-term) Methyl (DE) Methyl (E) Methyl (H) Methyl (K) Methyl (R) Methyl:13C(1)2H(3) (C-term) Methyl:13C(1)2H(3) (DE) Methylthiol (C) Nethylmaleimide (C) Nitro (Y) Oxidation (M) Oxidation (P) Oxidation (PWY) Oxidation (W) Oxidation (Y) PEO-Iodoacetyl-LC-Biotin (C) Phospho (ST) Phospho (STY) Phospho (Y) Propionamide (C) Pyridylethyl (C) Quinone (W) SerTyr (N-term) SerTyr+iTRAQ (N-term) SerTyrLys(OAc) (N-term) SerTyrLys(OAcs) (N-term) Sulfo (Y) TMT (K) TMT (N-term) TMT2plex (K) TMT2plex (N-term) TMT6plex (K) TMT6plex (N-term) Trioxidation (C) Trp->Hydroxykynurenin (W) Trp->Kynurenin (W) Xlink:BSSA1 (N-term) Xlink:BSSA2 (N-term) Xlink:DSS1 (N-term) Xlink:DSS2 (N-term) Xlink:FCXL1-1 (N-term) Xlink:FCXL1-2 (N-term)
[-] Pre-Search Parameters Protein MW (Da) to All Protein pI to All Hits From msfit mspattern mshomology mstag msseq Name Remove Selected Taxonomy Taxonomy Names Accession Numbers Names Additional Accession Numbers
	Amino Acid Statistics Histogram Range to Bandwidth

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