University of California, San FranciscoAbout UCSFSearch UCSFUCSF  medical center
Database
[-] User Protein Sequence
DNA Frame Translation N Term AA Limit
Taxonomy
Output Hits to file Name
Digest Non-Specific
Max. Missed Cleavages
Constant
Mods
[-] Pre-Search Parameters
Sample ID (comment)
Maximum Reported Hits
Search Type Fragment ion series
Composition Exclude
Regular Expression
Masses are
Parent Tol Sys Err
Frag Tol
AA Composition (based on immonium and related ions)
60
S
70
R,P
72
V
74
T
86
L,I
87
N,R
88
D
84,101,129
K,Q
102
E
104
M
110
H
120
F
126
P
136
Y
117,130,159,170
W
70,73,87,100,112,185
R
AA Composition (based on loss from parent ion)
-SRH,-R
C
(select modified Cys)
-80
PO4 - S,T,Y
(homology)
-98
PO4 - S,T
(homology)
-64
Mso
(homology)
-17
R
 
Note: For ions with multiple residues (i.e. 86: means I or L).
Note: Requires presence of at least one AA for each composition ion selected.
Instrument Data Format
Data Paste Area